Tutorials

Each workshop day includes hands-on tutorial sessions where you will apply the analyses discussed for the different topics.

• Tutorial day 2 - Metabolomics data analysis
  • Metabolomics: Rmd files
  • Additional information
    • Datacamp Introduction to R: link to Datacamp
    • GitHub introduction: link to GitHub documentation
• Tutorial day 3 - Transcriptomics data analysis
  • RNA sequencing: Dataset and Rmd file
  • Illumina beadchip: Dataset and Rmd file
  • Public data repositories
    • Gene Expression Omnibus (GEO): Website
    • ArrayExpress: Website
    • MetaboLights: Website
    • European Nucleotide Archive (ENA): Website
    • MGnify: Website
  • Additional information:
    • Datacamp RNA-seq/DESeq2 tutorial: link to Datacamp
    • DESeq2 R-package: website
    • Datacamp Limma tutorial: link to Datacamp
    • Limma R-package: website
• Tutorial day 4 - Pathway and network analysis
  • Slides: Pathway analysis
  • Scripts and dataset: Download
  • Additional information:
    • Cytoscape tutorials: website
    • WikiPathways Academy: website
• Tutorial day 5 - Research data management
  • Data Steward Wizard: website
  • RDMkit: website
  • FAIR Cookbook: website